Genome projects

Looking for human genes? The CHESS human gene database has its own page, ccb.jhu.edu/chess 

Our group has been assembling genomes for many years, ranging from tiny (viruses and bacteria) to enormous (pine trees). This continues to be a very active area for the lab. Here we list some of the genomes that we’ve assembled along with the publications. 

Virtually all of the projects listed here are collaborations with other labs; see the publications for a list of all the scientists involved on each one. Many older genomes are not listed here, including dozens of genomes sequenced when the lab was at TIGR (1997-2005) and the University of Maryland (2005-11), and hundreds of influenza virus genomes sequenced at TIGR for the Influenza Genome Sequencing Project, which our lab co-founded.

RF
Wheat
15 Gbp
Triticum aestivum
Logo for The Personal Genome Project
Ashkenazi Human
3 Gbp
Homo sapiens
Zen Rial/Moment/Getty Images
Coastal Redwood
33 Gbp
Sequoia sempervirens
Wildland Trekking
Giant Sequoia
11 Gbp
Sequoia giganteum
Logo for CAAPA
African Pan-Genome
Homo sapiens
Niels Proctor, UF/IFAS
Loblolly Pine
22 Gbp
Pinus taeda
Photo by Dr_Microbe
Pathogenic Fungus
37 Mbp
Lomentospora prolificans
Photo by J. Maughn, Flickr
Sugar Pine
31 Gbp
Pinus lambertiana
RF
Douglas Fir
18 Gbp
Pseudotsuga mensiesii
Patrick E. McGuire, University of California, Davis
Goat Grass
22 Gbp
Aegilops tauschii
Wildlife Heritage Foundation
Valley Oak
750 Mbp
Quercus lobata
RF
English Walnut
620 Mbp
Juglans regia
RF
Texas Walnut
940 Mbp
Juglans microcarpa
Photo by Plant Image Library, Flikr
Chinese Walnut
800 Mbp
Juglans cathayensis
Photo by Scott Zona, Flickr
Chinese Wingnut
950 Mbp
Pterocarya stenoptera
Whitney Cranshaw, Colorado State University
Hind’s Black Walnut
650 Mbp
Juglans hindsii
Photo by Linda Wolfe
Macaque
2.72 Gbp
Rhesus macaque
Photo by David Cappaert, Bugwood.org
Common Eastern Bumble Bee
250 Mbp
Bombus impatiens
Photo by Jatai
Alfalfa Leafcutter Bee
275 Mbp
Megachile rotundata
Photo by S. Rae, Flickr
Tropical Butterfly
269 Mbp
Heliconius melpomene
Photo by Donald Groth, Bugwood.org
Xanthomonas
4.8 Mbp
Xanthomonas oryzae
Photo by Mike Fusaro
Domestic Turkey
1.2 Gbp
Meleagris gallopavo
Photo by Bram Cymet, Flickr
Domestic Cow
2.9 Gbp
Bos taurus
Photo by Susannah Anderson, Flickr
Wolbachia
1.5 Mbp
Wolbachia (endosymbiont of Cullex mosquito)
Photo by Kateryna Kon, Science Photo Library
Francisella
1.9 Mbp
Francisella tularensis
Photo by Kateryna Kon, Science Photo Library
Pseudomonas
6.3 Mbp
Pseudomonas aeruginosa Pab1
Photo by Donald Groth, Bugwood.org
Xanthomonas
5.2 Mbp
Xanthomonas oryzae PX099A
Photo by Hafiz Issadeen, Flickr
Papaya
370 Mbp
Carica papaya