February 2024: Congratulations! to former postdoc
Martin Steinegger, who was announced as the 2024 winner of the Overton Prize from ISCB.
October 7 2023: In
"Major data analysis errors invalidate cancer microbiome findings", published in
mBio, we describe how a major cancer microbiome study was fatally flawed.
October 4 2023: Our
Nature paper on
"The status of the human gene catalog", provides a broad look at how complete and accurate today's human annotation is.
August 7 2023: Markus Sommer successfully defends his Ph.D. thesis!
August 1 2023: Ales Varabyou successfully defends his Ph.D. thesis! Ales was jointly advised by Mihaela Pertea and Steven Salzberg.
July 2023: A new paper in
Nature Computational Science, led by
Ales Varabyou, describes
ORFanage, a system that finds protein-coding regions in RNA-seq assemblies, guided by annotation.
Mar 2023: Undergraduate lab member Alina Guo and senior scientist Aleksey Zimin describe a new assembly polishing method, JASPER, in
PLoS Computational Biology.
Jan 2023: A new paper in
G3: Genes, Genomes, Genetics, led by
Kuan-Hao Chao (a joint member of the Salzberg and Pertea labs), describes the first gap-free assembly of a Han Chinese human. See the paper
here.
Dec 2022: A new paper in
eLife, led by
Markus Sommer, shows how protein structure can yield remarkable insights into gene function. See the paper
here.
Aug 2022: New lab members! Hayden Ji and Celine Hoh join the lab as Ph.D. candidates in Computer Science.
March 31, 2022: A team of over 100 scientists, including lab member Alaina Shumate, publishes the first-ever truly complete human genome in the journal
Science. See the paper
here, and see a perspective about the work
here.
March 18, 2022: Alaina Shumate successfully defends her Ph.D. thesis!