 |
Steven Salzberg, Ph.D. Bloomberg Distinguished Professor of Biomedical Engineering,Computer Science, and Biostatistics |
 |
Aleksey Zimin, Ph.D. Associate Research Scientist, Biomedical Engineering |
 |
Daniela Puiu, M.S., Bioinformatics Engineer and Senior Software Engineer |
 |
Jennifer Lu, Ph.D., Staff Engineer (former Ph.D. student and postdoc) |
 |
Ilia Minkin, Ph.D., Postdoctoral Fellow |
 |
Ales Varabyou, Ph.D. student (co-advisor: Mihaela Pertea) |
 |
Markus Sommer, Ph.D. student |
 |
Beril Erdogdu, Ph.D. student (co-advisor: Mihaela Pertea) |
 |
Natalia Rincon, Ph.D. student |
 |
Yuchen (Peter) Ge, Ph.D. student |
 |
Kuan-Hao Chao, Ph.D. student (co-advisor: Mihaela Pertea) |
 |
Celine Hoh, Ph.D. student |
 |
Hayden (Hyun Joo) Ji, Ph.D. student |
Undergraduate lab members
Jakob Heinz, undergraduate research assistant
Alina Guo, undergraduate research assistant
Abby Liu, undergraduate research assistant
Lab Alumni (former Ph.D. students indicated by *)
 |
*Alaina Shumate, Ph.D. (2022) Assistant Principal Investigator, National Biodefense Analysis and Countermeasures Center (NBACC) |
 |
Government scientist, Germany |
 |
*Rachel Sherman, Ph.D. (2021) Bioinformatics Support Scientist, Illumina Inc. |
 |
Martin Steinegger, Ph.D. Assistant Professor, School of Biological Sciences, Seoul National University |
 |
Florian Breitwieser, Ph.D. Senior Bioinformatics Software Engineer, SOPHiA Genetics. |
 |
Remy Schwab, former M.S.E. student, now at Day Zero Diagnostics. |
 |
*Daehwan Kim, Ph.D. (2013) Michael L. Rosenberg Assistant Professor, Dept. of Bioinformatics, UT Southwestern Medical Center |
 |
Ruibang Laurent Luo, Ph.D. Assistant Professor, Dept. of Computer Science, The University of Hong Kong |
 |
Geo Pertea, M.S., M.D. Data/Software Engineer, The Lieber Institute for Brain Development |
 |
Art Delcher, Ph.D. Former Research Professor at Hopkins, retired as of July 1, 2016 |
 |
Corina Antonescu Senior Software Engineer, Dept. of Genetic Medicine, JHU School of Medicine |
 |
Valentin Antonescu Senior Software Engineer, OMIM (Online Mendelian Inheritance in Man), JHU School of Medicine |
 |
*Derrick Wood, Ph.D. (2014) Senior Scientist, Output Biosciences |
 |
Rachel Coston, former M.S.E. student, Software Engineer, Raytheon |
 |
Stefan Canzar, Ph.D. Postdoctoral Fellow, 2012-2014. Group Leader, Univ. of Munich |
 |
Stefan Pabinger, Ph.D. Visiting Postdoctoral Fellow, 2012-2013. Now at the Austrian Inst. of Technology. |
 |
*Ben Langmead, Ph.D. Associate Professor, JHU Computer Science Dept. |
 |
Tanja Magoc, Ph.D. Postdoctoral Fellow, 2010-2012. Staff scientist, University of Florida |
 |
Liliana Florea, Ph.D. Associate Professor, McKusick-Nathans Institute of Genetic Medicine and Dept. of Computer Science, Johns Hopkins University |
 |
*Mike Schatz, Ph.D. (2010) Bloomberg Distinguished Professor of Computer Science and Biology, Johns Hopkins University |
 |
*Adam Phillippy, Ph.D. (2010) Senior Investigator, National Human Genome Research Institute, NIH |
 |
*Cole Trapnell, Ph.D. (2010) Associate Professor, Genome Sciences, University of Washington |
 |
*David Kelley, Ph.D. (2011) Scientist, Calico Labs |
 |
Todd Treangen, Ph.D. Assistant Professor, Computer Science, Rice University |
 |
*Sam Angiuoli, Ph.D. (2011) Chief Information Officer, Personal Genome Diagnostics |
 |
Arthur Brady, Ph.D. Staff Scientist, Inst. for Genome Sciences., U. Maryland School of Medicine |
 |
Henry Lin, Ph.D. Staff Scientist, Philips Research. |
 |
Carl Kingsford, Ph.D. Professor, Computational Biology Dept., Carnegie Mellon Univ. |
 |
Mihai Pop, Ph.D. Professor of Computer Science and Director of UMIACS, University of Maryland |
< |
*Jonathan Allen, Ph.D. (2006) Research Scientist, Lawrence Livermore Natl. Laboratory |
 |
*Mihaela (Ela) Pertea, Ph.D. (2001) Associate Professor of Biomedical Engineering and Genetic Medicine, Johns Hopkins University |
 |
Bill Majoros, Ph.D. Assistant Professor, Department of Biostatistics & Bioinformatics, Duke University |
 |
Carlos Canchaya, Ph.D. Former visiting postdoctoral fellow. Research Fellow, Universida de Vigo, Spain. |
 |
Kunmi Ayanbule, Bioinformatics Engineer at CBCB, later at Bluegate.co |
 |
Dan Sommer, Bioinformatics Engineer at CBCB, later at Natl. Biodefense and Countermeasures Center (NBACC) |
 |
Pawel Gajer, Ph.D. Bioinformatics Scientist (TIGR), now at Institute of Genome Sciences, U. Maryland School of Medicine |
|
Maria Ermolaeva, Ph.D., former postdoc and Bioinformatics Scientist at TIGR, now an instructor in Hopkins Engineering for Professionals program. |
 |
Natalia Volfovsky, Ph.D. Former postdoc (TIGR), now at Simons Foundation |
 |
Olga Troyanskaya, Ph.D. Summer intern, 1997 and 1998 Professor, Dept. of Computer Science and Lewis-Sigler Inst. of Integrative Genomics, Princeton University Deputy Director for Genomics, Flatiron Institute, Simons Foundation, NYC |
 |
*John Sheppard, Ph.D. (1997) College of Engineering Distinguished Professor, Gianforte School of Computing, Montana State Univ. |
 |
*Sreerama K. Murthy, Ph.D. (1995) CEO & Chief Data Scientist, Quadratyx |
Salzberg Lab 