|Steven Salzberg, Ph.D. Bloomberg Distinguished Professor of Biomedical Engineering,Computer Science, and Biostatistics|
|Aleksey Zimin, Ph.D.
Associate Research Scientist, Biomedical Engineering
|Daniela Puiu, M.S., Bioinformatics Engineer and Senior Software Engineer|
|Christopher Pockrandt, Ph.D., Postdoctoral Fellow|
|Jennifer Lu, Ph.D., Postdoctoral Fellow|
|Ilia Minkin, Ph.D., Postdoctoral Fellow|
|Rachel Sherman, Ph.D. (completed in early 2021)|
|Ales Varabyou, Ph.D. student (co-advisor: Mihaela Pertea)|
|Alaina Shumate, Ph.D. student|
|Markus Sommer, Ph.D. student|
|Beril Erdogdu, Ph.D. student (co-advisor: Mihaela Pertea)|
|Natalia Rincon, Ph.D. student|
|Yuchen (Peter) Ge, Ph.D. rotation student|
Undergraduate lab membersJakob Heinz, undergraduate research assistant
William Cho, summer intern 2020
Tongtong Chen, summer intern 2020
Lab Alumni (former Ph.D. students indicated by *)
|Martin Steinegger, Ph.D.
Assistant Professor, School of Biological Sciences, Seoul National University
|Florian Breitwieser, Ph.D.
Senior Bioinformatics Software Engineer, SOPHiA Genetics.
|Remy Schwab, former M.S.E. student, now at Day Zero Diagnostics.|
|*Daehwan Kim, Ph.D. (2013)
Michael L. Rosenberg Assistant Professor, Dept. of Bioinformatics, UT Southwestern Medical Center
|Ruibang Laurent Luo, Ph.D.
Assistant Professor, Dept. of Computer Science, The University of Hong Kong
|Geo Pertea, M.S., M.D.
Data/Software Engineer, The Lieber Institute for Brain Development
|Art Delcher, Ph.D.
Former Research Professor at Hopkins, retired as of July 1, 2016
Senior Software Engineer, Dept. of Genetic Medicine, JHU School of Medicine
Senior Software Engineer, OMIM (Online Mendelian Inheritance in Man), JHU School of Medicine
|*Derrick Wood, Ph.D. (2014)
Principal Bioinformatics Scientist, Personal Genome Diagnostics
|Rachel Coston, former M.S.E. student, Software Engineer, Raytheon|
|Stefan Canzar, Ph.D.
Postdoctoral Fellow, 2012-2014. Group Leader, Univ. of Munich
|Stefan Pabinger, Ph.D.
Visiting Postdoctoral Fellow, 2012-2013. Now at the Austrian Inst. of Technology.
|*Ben Langmead, Ph.D.
Associate Professor, JHU Computer Science Dept.
|Tanja Magoc, Ph.D.
Postdoctoral Fellow, 2010-2012. Staff scientist, University of Florida
|Liliana Florea, Ph.D.
Associate Professor, McKusick-Nathans Institute of Genetic Medicine and Dept. of Computer Science, Johns Hopkins University
|*Mike Schatz, Ph.D. (2010)
Bloomberg Distinguished Associate Professor of Computer Science and Biology, Johns Hopkins University
|*Adam Phillippy, Ph.D. (2010)
Senior Investigator, National Human Genome Research Institute, NIH
|*Cole Trapnell, Ph.D. (2010)
Assistant Professor, Genome Sciences, University of Washington
|*David Kelley, Ph.D. (2011)
Scientist, Calico Labs
|Todd Treangen, Ph.D.
Assistant Professor, Computer Science, Rice University
|*Sam Angiuoli, Ph.D. (2011)
Chief Information Officer, Personal Genome Diagnostics
|Arthur Brady, Ph.D.
Staff Scientist, Inst. for Genome Sciences., U. Maryland School of Medicine
|Henry Lin, Ph.D.
Staff Scientist, Philips Research.
|Carl Kingsford, Ph.D.
Professor, Computational Biology Dept., Carnegie Mellon Univ.
|Mihai Pop, Ph.D.
Professor of Computer Science and Director of UMIACS, University of Maryland
|<||*Jonathan Allen, Ph.D. (2006)
Research Scientist, Lawrence Livermore Natl. Laboratory
|*Mihaela (Ela) Pertea, Ph.D. (2001)
Associate Professor of Biomedical Engineering and Genetic Medicine, Johns Hopkins University
|Bill Majoros, Ph.D.
Assistant Professor, Department of Biostatistics & Bioinformatics, Duke University
|Carlos Canchaya, Ph.D.
Former visiting postdoctoral fellow. Research Fellow, Universida de Vigo, Spain.
|Kunmi Ayanbule, Bioinformatics Engineer at CBCB, later at Bluegate.co|
|Dan Sommer, Bioinformatics Engineer at CBCB, later at Natl. Biodefense and Countermeasures Center (NBACC)|
|Pawel Gajer, Ph.D.
Bioinformatics Scientist (TIGR), now at Institute of Genome Sciences, U. Maryland School of Medicine
|Maria Ermolaeva, Ph.D., former postdoc and Bioinformatics Scientist at TIGR, now an instructor in Hopkins Engineering for Professionals program.|
|Natalia Volfovsky, Ph.D.
Former postdoc (TIGR), now at Simons Foundation
|Olga Troyanskaya, Ph.D.
Summer intern, 1997 and 1998
Professor, Dept. of Computer Science and Lewis-Sigler Inst. of Integrative Genomics, Princeton University
Deputy Director for Genomics, Flatiron Institute, Simons Foundation, NYC
|*John Sheppard, Ph.D. (1997)
College of Engineering Distinguished Professor, Gianforte School of Computing, Montana State Univ.
|*Sreerama K. Murthy, Ph.D. (1995)
CEO & Chief Data Scientist, Quadratyx