Under construction!
Until this is ready, please see my old Publications page or my Google Scholar page, which has links to most of my publications.
Meanwhile here is our newest paper:
M. Pertea, G.M. Pertea, C.M. Antonescu, T.C. Chang, J.T. Mendell, and S.L. Salzberg (2015). StringTie enables improved reconstruction of a transcriptome from RNA-seq reads Nature Biotechnology 33 (3), 290-295. Publ. online 18 February 2015.